How many times did you run the fix? If you run it once and it fixes something (reboot needed), make sure you run it again. It may find something else in a later step. Also try running for all your drives just to make sure something with another one is not causing some problem.

Other than that, I don't know as up until using it, nothing else worked for me. I did have to run it multiple times, the 2 times I used it, for it to correct all the problems.