You're already jumping into advanced editing when you don't even pass the basics. It's like jumping grades. Try reading here for a start:
http://www.dvd-replica.com/DVD/index.php so you understand how it works. And get familiar with commands. You don't have to memorize it. In
DvdReMake, there's a brief description of what each one does. When you encounter a Jump/Call command and you don't know where it leads, Open Destination (Ctrl+Space) will lead you to it. I use this most of the time, mainly saves me from clicking the destination. Just keep pressing Ctrl+Space until you get there.
As I said earlier, without the files I can't help you walk through it. You've been at this for a week. You could've finished this a long time ago if you just hide.
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Is there a program that is capable of fixing invalid ifo files created by the deletion of unwanted title sets ??
see what I'm wondering is as editing the structure of a dvd seems to be so difficult why it is that no one has come up with an automated method of doing this
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Maybe you can try PgcEdit, it has many functions and macros that could help you. "Calls cross reference" and "Find jumps to nowhere" are helpful when it comes to deleting stuff. The limitation of the program is that you can only delete the last VTS or PGC.
DvdReMake Pro is still at its infancy stage when it comes to debug feature, simulating states and automated fix after modification. It's probably already on the to-do list.