I have this same problem with my copy of The Kingdom. I have tried DVDshrink and Clonedvd2. I tried with both anydvd on and off (no encryption or region crap so anydvd is not necessary). I also tried to reauthor the dvd but it crapped out at the same video spot it did in full clone mode. The format of the dvd is a bit weird...2 1-hr episodes, but it has 2 copies of each: title 1 and 2 are the first and title 17 and 18 are the second. The problem lies 29% of the way through the first episode, regardless which of the 2 copies of the first episode you choose.
dvdshrink error: "Programming error - exception occurred. The handle is invalid"